IL_6I7V_339

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_339 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.0825

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

6I7V|1|DA|G|2843
6I7V|1|DA|G|2844
6I7V|1|DA|U|2845
6I7V|1|DA|G|2846
*
6I7V|1|DA|C|2870
6I7V|1|DA|U|2871
6I7V|1|DA|A|2872
6I7V|1|DA|A|2873
6I7V|1|DA|C|2874

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DD

50S ribosomal protein L3

Chain DO

50S ribosomal protein L17

Chain DQ

50S ribosomal protein L19