IL_6I7V_358

3D structure

PDB id

6I7V (explore in PDB, NAKB, or RNA 3D Hub)

Description

Ribosomal protein paralogs bL31 and bL36

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GU(5MC)*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I7V_358 not in the Motif Atlas

Homologous match to IL_5J7L_363

Geometric discrepancy: 0.1123

The information below is about IL_5J7L_363

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6I7V|1|AA|G|1405
6I7V|1|AA|U|1406
6I7V|1|AA|5MC|1407
*
6I7V|1|AA|G|1494
6I7V|1|AA|U|1495
6I7V|1|AA|C|1496

Current chains

Chain AA

16S ribosmal RNA

Nearby chains

Chain DA

Large subunit ribosomal RNA; LSU rRNA