IL_6I9R_030

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GC*GUAU

Length

6 nucleotides

Bulged bases

6I9R|1|A|U|2628, 6I9R|1|A|A|2629

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I9R_030 not in the Motif Atlas

Geometric match to IL_7V9E_001

Geometric discrepancy: 0.1835

The information below is about IL_7V9E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

6I9R|1|A|G|2596
6I9R|1|A|C|2597
*
6I9R|1|A|G|2627
6I9R|1|A|U|2628
6I9R|1|A|A|2629
6I9R|1|A|U|2630

Current chains

Chain A

16S rRNA

Nearby chains