IL_6I9R_031

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CAUAA(5MU)CACUUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

6I9R|1|A|A|2601, 6I9R|1|A|U|2607, 6I9R|1|A|U|2626

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6I9R|1|A|C|2597
6I9R|1|A|A|2598
6I9R|1|A|U|2599
6I9R|1|A|A|2600
6I9R|1|A|A|2601
6I9R|1|A|5MU|2602
6I9R|1|A|C|2603
6I9R|1|A|A|2604
6I9R|1|A|C|2605
6I9R|1|A|U|2606
6I9R|1|A|U|2607
6I9R|1|A|G|2608
*
6I9R|1|A|C|2624
6I9R|1|A|5MC|2625
6I9R|1|A|U|2626
6I9R|1|A|G|2627

Current chains

Chain A

16S rRNA

Nearby chains