IL_6I9R_039

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AG*CCU

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I9R_039 not in the Motif Atlas

Geometric match to IL_7A0S_083

Geometric discrepancy: 0.1563

The information below is about IL_7A0S_083

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

61

Unit IDs

6I9R|1|A|A|2940
6I9R|1|A|G|2941
*
6I9R|1|A|C|2985
6I9R|1|A|C|2986
6I9R|1|A|U|2987

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain o

Ribosomal protein 63, mitochondrial