IL_6I9R_052

3D structure

PDB id

6I9R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCUAC*GCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6I9R_052 not in the Motif Atlas

Geometric match to IL_8P9A_431

Geometric discrepancy: 0.2627

The information below is about IL_8P9A_431

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.13

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

23

Unit IDs

6I9R|1|A|C|3148
6I9R|1|A|C|3149
6I9R|1|A|U|3150
6I9R|1|A|A|3151
6I9R|1|A|C|3152
*
6I9R|1|A|G|3161
6I9R|1|A|C|3162
6I9R|1|A|G|3163

Current chains

Chain A

16S rRNA

Nearby chains

Chain E

39S ribosomal protein L3, mitochondrial

Chain L

39S ribosomal protein L14, mitochondrial

Chain Q

39S ribosomal protein L19, mitochondrial