3D structure

PDB id
6I9R (explore in PDB, NAKB, or RNA 3D Hub)
Description
Large subunit of the human mitochondrial ribosome in complex with Virginiamycin M and Quinupristin
Experimental method
ELECTRON MICROSCOPY
Resolution
3.9 Å

Loop

Sequence
AUCUACAAUCAACCAAC*GUCAUU
Length
23 nucleotides
Bulged bases
6I9R|1|A|C|2393, 6I9R|1|A|U|2404, 6I9R|1|A|C|2405, 6I9R|1|A|A|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6I9R|1|A|A|2384
6I9R|1|A|U|2385
6I9R|1|A|C|2386
6I9R|1|A|U|2387
6I9R|1|A|A|2388
6I9R|1|A|C|2389
6I9R|1|A|A|2390
6I9R|1|A|A|2391
6I9R|1|A|U|2392
6I9R|1|A|C|2393
6I9R|1|A|A|2394
6I9R|1|A|A|2395
6I9R|1|A|C|2396
6I9R|1|A|C|2397
6I9R|1|A|A|2398
6I9R|1|A|A|2399
6I9R|1|A|C|2400
*
6I9R|1|A|G|2403
6I9R|1|A|U|2404
6I9R|1|A|C|2405
6I9R|1|A|A|2406
6I9R|1|A|U|2407
6I9R|1|A|U|2408

Current chains

Chain A
16S rRNA

Nearby chains

Chain 5
39S ribosomal protein L37, mitochondrial
Chain D
39S ribosomal protein L2, mitochondrial
Chain s
39S ribosomal protein S30, mitochondrial

Coloring options:

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