IL_6J6G_008
3D structure
- PDB id
- 6J6G (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CC*GAUG
- Length
- 6 nucleotides
- Bulged bases
- 6J6G|1|E|A|79, 6J6G|1|E|U|80
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6J6G_008 not in the Motif Atlas
- Geometric match to IL_5J7L_341
- Geometric discrepancy: 0.1594
- The information below is about IL_5J7L_341
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_42626.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 14
Unit IDs
6J6G|1|E|C|67
6J6G|1|E|C|68
*
6J6G|1|E|G|78
6J6G|1|E|A|79
6J6G|1|E|U|80
6J6G|1|E|G|81
Current chains
- Chain E
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-splicing factor 8
- Chain B
- ACT1 pre-mRNA
- Chain L
- U2 splicesomal small nuclear RNA; U2 snRNA
- Chain P
- Pre-mRNA-processing protein 45
- Chain Q
- Pre-mRNA-splicing factor SLT11
- Chain S
- Pre-mRNA-splicing factor CWC15
- Chain c
- Pre-mRNA-splicing factor CEF1
- Chain d
- Pre-mRNA-splicing factor CLF1
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