IL_6J6G_016

3D structure

PDB id

6J6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUG*UCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6J6G_016 not in the Motif Atlas

Geometric match to IL_4YHW_001

Geometric discrepancy: 0.1158

The information below is about IL_4YHW_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6J6G|1|B|A|258
6J6G|1|B|U|259
6J6G|1|B|G|260
*
6J6G|1|L|U|40
6J6G|1|L|C|41
6J6G|1|L|U|42

Current chains

Chain B

ACT1 pre-mRNA

Chain L

U2 snRNA

Nearby chains

Chain A

Pre-mRNA-splicing factor 8