IL_6J6G_017

3D structure

PDB id

6J6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAC*GU

Length

5 nucleotides

Bulged bases

6J6G|1|B|A|266

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6J6G_017 not in the Motif Atlas

Geometric match to IL_8B0X_166

Geometric discrepancy: 0.3797

The information below is about IL_8B0X_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

6J6G|1|B|A|265
6J6G|1|B|A|266
6J6G|1|B|C|267
*
6J6G|1|L|G|34
6J6G|1|L|U|35

Current chains

Chain B

ACT1 pre-mRNA

Chain L

U2 snRNA

Nearby chains

Chain A

Pre-mRNA-splicing factor 8

Chain E

U6 spliceosomal RNA; U6 snRNA