IL_6J6G_018

3D structure

PDB id

6J6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the yeast B*-a2 complex at an average resolution of 3.2 angstrom

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GAUCAAUGGC*GUUAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6J6G|1|D|G|14
6J6G|1|D|A|15
6J6G|1|D|U|16
6J6G|1|D|C|17
6J6G|1|D|A|18
6J6G|1|D|A|19
6J6G|1|D|U|20
6J6G|1|D|G|21
6J6G|1|D|G|22
6J6G|1|D|C|23
*
6J6G|1|D|G|148
6J6G|1|D|U|149
6J6G|1|D|U|150
6J6G|1|D|A|151
6J6G|1|D|C|152

Current chains

Chain D

U5 snRNA

Nearby chains

Chain k

Small nuclear ribonucleoprotein-associated protein B

Chain m

Small nuclear ribonucleoprotein Sm D1