IL_6JDV_004

3D structure

PDB id

6JDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in catalytic state

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GCUCU*AUC

Length

8 nucleotides

Bulged bases

6JDV|1|B|U|139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

6JDV|1|B|G|105
6JDV|1|B|C|106
6JDV|1|B|U|107
6JDV|1|B|C|108
6JDV|1|B|U|109
*
6JDV|1|B|A|138
6JDV|1|B|U|139
6JDV|1|B|C|140

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9