IL_6JFU_003

3D structure

PDB id

6JFU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of Nme2Cas9 in complex with sgRNA and target DNA (AGGCCC PAM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

6JFU|1|B|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6JFU_003 not in the Motif Atlas

Geometric match to IL_7RQB_038

Geometric discrepancy: 0.2906

The information below is about IL_7RQB_038

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.16

Basepair signature

cWW-L-cWW

Number of instances in this motif group

116

Unit IDs

6JFU|1|B|C|69
6JFU|1|B|C|70
*
6JFU|1|B|G|83
6JFU|1|B|U|84
6JFU|1|B|G|85

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9