IL_6KC8_003

3D structure

PDB id

6KC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of WT Nme1Cas9 in complex with sgRNA and target DNA (ATATGATT PAM) in post-cleavage state

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

6KC8|1|B|U|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KC8_003 not in the Motif Atlas

Geometric match to IL_6JDV_003

Geometric discrepancy: 0.1168

The information below is about IL_6JDV_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

170

Unit IDs

6KC8|1|B|C|69
6KC8|1|B|C|70
*
6KC8|1|B|G|83
6KC8|1|B|U|84
6KC8|1|B|G|85

Current chains

Chain B

sgRNA

Nearby chains

Chain A

CRISPR-associated endonuclease Cas9