IL_6KE6_015

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAUU*GAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KE6_015 not in the Motif Atlas

Geometric match to IL_6CZR_168

Geometric discrepancy: 0.2299

The information below is about IL_6CZR_168

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67743.1

Basepair signature

cWW-cWW-cWH-cWW

Number of instances in this motif group

9

Unit IDs

6KE6|1|5A|A|187
6KE6|1|5A|A|188
6KE6|1|5A|U|189
6KE6|1|5A|U|190
*
6KE6|1|5A|G|207
6KE6|1|5A|A|208
6KE6|1|5A|G|209
6KE6|1|5A|U|210

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5B

Bud site selection protein 21

Chain 5D

U3 small nucleolar RNA-associated protein 11