IL_6KE6_021

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

6KE6|1|5A|U|382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KE6_021 not in the Motif Atlas

Geometric match to IL_4FRG_002

Geometric discrepancy: 0.2004

The information below is about IL_4FRG_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6KE6|1|5A|C|342
6KE6|1|5A|C|343
*
6KE6|1|5A|G|381
6KE6|1|5A|U|382
6KE6|1|5A|G|383

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 5C

U3 small nucleolar RNA-associated protein 7

Chain 5E

U3 small nucleolar RNA-associated protein MPP10

Chain RQ

U3 small nucleolar RNA-associated protein 14

Chain RV

Protein FAF1