3D structure

PDB id
6KE6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GU*AUC
Length
5 nucleotides
Bulged bases
6KE6|1|5A|U|440
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6KE6_027 not in the Motif Atlas
Geometric match to IL_3WBM_001
Geometric discrepancy: 0.3188
The information below is about IL_3WBM_001
Detailed Annotation
Single bulged U
Broad Annotation
No text annotation
Motif group
IL_89505.4
Basepair signature
cWW-L-cWW
Number of instances in this motif group
117

Unit IDs

6KE6|1|5A|G|414
6KE6|1|5A|U|415
*
6KE6|1|5A|A|439
6KE6|1|5A|U|440
6KE6|1|5A|C|441

Current chains

Chain 5A
5' ETS

Nearby chains

Chain 5J
rRNA-processing protein FCF2
Chain RI
Ribosome biogenesis protein UTP30
Chain RJ
Ribosome biogenesis protein BMS1

Coloring options:


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