IL_6KE6_030

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGC*GAGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KE6_030 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.3769

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_55516.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

6KE6|1|5A|C|501
6KE6|1|5A|G|502
6KE6|1|5A|C|503
*
6KE6|1|5A|G|533
6KE6|1|5A|A|534
6KE6|1|5A|G|535
6KE6|1|5A|A|536
6KE6|1|5A|G|537

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 3D

Nucleolar protein 56

Chain B6

U3 small nucleolar RNA-associated protein 6

Chain RQ

U3 small nucleolar RNA-associated protein 14