IL_6KE6_032

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AG*UUU

Length

5 nucleotides

Bulged bases

6KE6|1|5A|U|525

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KE6_032 not in the Motif Atlas

Geometric match to IL_3WBM_001

Geometric discrepancy: 0.3167

The information below is about IL_3WBM_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6KE6|1|5A|A|510
6KE6|1|5A|G|511
*
6KE6|1|5A|U|524
6KE6|1|5A|U|525
6KE6|1|5A|U|526

Current chains

Chain 5A

5' ETS

Nearby chains

Chain 3D

Nucleolar protein 56

Chain 5I

Protein SOF1

Chain RQ

U3 small nucleolar RNA-associated protein 14