IL_6KE6_054

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UC*GGA

Length

5 nucleotides

Bulged bases

6KE6|1|SA|G|459

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KE6_054 not in the Motif Atlas

Geometric match to IL_4LFB_016

Geometric discrepancy: 0.2305

The information below is about IL_4LFB_016

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

6KE6|1|SA|U|447
6KE6|1|SA|C|448
*
6KE6|1|SA|G|458
6KE6|1|SA|G|459
6KE6|1|SA|A|460

Current chains

Chain SA

18S rRNA

Nearby chains

Chain RB

U3 small nucleolar ribonucleoprotein protein LCP5

Chain SF

40S ribosomal protein S4-A

Chain SZ

40S ribosomal protein S24-A