IL_6KE6_081

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CACUG*CGUGCUGGGGAUAUUCAACGAG

Length

27 nucleotides

Bulged bases

6KE6|1|SA|U|1473, 6KE6|1|SA|G|1536, 6KE6|1|SA|A|1545

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6KE6|1|SA|C|1470
6KE6|1|SA|A|1471
6KE6|1|SA|C|1472
6KE6|1|SA|U|1473
6KE6|1|SA|G|1474
*
6KE6|1|SA|C|1533
6KE6|1|SA|G|1534
6KE6|1|SA|U|1535
6KE6|1|SA|G|1536
6KE6|1|SA|C|1537
6KE6|1|SA|U|1538
6KE6|1|SA|G|1539
6KE6|1|SA|G|1540
6KE6|1|SA|G|1541
6KE6|1|SA|G|1542
6KE6|1|SA|A|1543
6KE6|1|SA|U|1544
6KE6|1|SA|A|1545
6KE6|1|SA|U|1566
6KE6|1|SA|U|1567
6KE6|1|SA|C|1568
6KE6|1|SA|A|1569
6KE6|1|SA|A|1570
6KE6|1|SA|C|1571
6KE6|1|SA|G|1572
6KE6|1|SA|A|1573
6KE6|1|SA|G|1574

Current chains

Chain SA

18S rRNA

Nearby chains

Chain AF

U3 small nucleolar RNA-associated protein 15

Chain RH

Ribosomal RNA small subunit methyltransferase NEP1

Chain RN

Nucleolar complex protein 14

Chain SG

40S ribosomal protein S5

Chain ST

40S ribosomal protein S18-A