IL_6KE6_086

3D structure

PDB id

6KE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6KE6_086 not in the Motif Atlas

Geometric match to IL_5BTP_004

Geometric discrepancy: 0.2559

The information below is about IL_5BTP_004

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.1

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

44

Unit IDs

6KE6|1|SA|U|1669
6KE6|1|SA|G|1670
6KE6|1|SA|A|1671
6KE6|1|SA|G|1672
*
6KE6|1|SA|C|1729
6KE6|1|SA|A|1730
6KE6|1|SA|A|1731
6KE6|1|SA|A|1732

Current chains

Chain SA

18S rRNA

Nearby chains

Chain B3

U3 small nucleolar RNA-associated protein 13