IL_6KQD_003
3D structure
- PDB id
- 6KQD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Thermus thermophilus initial transcription complex comprising sigma A and 5'-OH RNA of 3 nt
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CATC*GATG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6KQD|1|Q|DC|5
6KQD|1|Q|DA|6
6KQD|1|Q|DT|7
6KQD|1|Q|DC|8
*
6KQD|1|R|DG|20
6KQD|1|R|DA|21
6KQD|1|R|DT|22
6KQD|1|R|DG|23
Current chains
- Chain Q
- DNA (5'-D(*CP*CP*T*GP*CP*AP*TP*CP*CP*GP*TP*GP*AP*GP*TP*CP*CP*AP*GP*GP*G)-3')
- Chain R
- DNA (5'-D(*TP*AP*TP*AP*AP*TP*GP*GP*GP*AP*GP*CP*TP*GP*TP*CP*AP*CP*GP*GP*AP*TP*GP*CP*AP*GP*G*)-3')
Nearby chains
- Chain M
- DNA-directed RNA polymerase subunit beta
- Chain N
- DNA-directed RNA polymerase subunit beta'
Coloring options: