IL_6LQM_011

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

6LQM|1|2|G|186, 6LQM|1|2|G|188

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|C|180
6LQM|1|2|C|181
6LQM|1|2|G|182
6LQM|1|2|C|183
6LQM|1|2|U|184
6LQM|1|2|C|185
6LQM|1|2|G|186
6LQM|1|2|U|187
6LQM|1|2|G|188
6LQM|1|2|G|189
*
6LQM|1|2|C|252
6LQM|1|2|G|253
6LQM|1|2|G|254
6LQM|1|2|C|255
6LQM|1|2|G|256

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain M

60S ribosomal protein L37

Chain Q

60S ribosomal protein L13