IL_6LQM_016
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GAAC*GAGUUCAAGAGGGC
- Length
- 18 nucleotides
- Bulged bases
- 6LQM|1|2|G|409, 6LQM|1|2|G|413
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQM_016 not in the Motif Atlas
- Homologous match to IL_5TBW_014
- Geometric discrepancy: 0.1208
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
6LQM|1|2|G|387
6LQM|1|2|A|388
6LQM|1|2|A|389
6LQM|1|2|C|390
*
6LQM|1|2|G|401
6LQM|1|2|A|402
6LQM|1|2|G|403
6LQM|1|2|U|404
6LQM|1|2|U|405
6LQM|1|2|C|406
6LQM|1|2|A|407
6LQM|1|2|A|408
6LQM|1|2|G|409
6LQM|1|2|A|410
6LQM|1|2|G|411
6LQM|1|2|G|412
6LQM|1|2|G|413
6LQM|1|2|C|414
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 0
- Zinc finger protein 622
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain P
- 60S ribosomal protein L39
- Chain Y
- 60S ribosomal protein L17
- Chain h
- 60S ribosomal protein L26
Coloring options: