IL_6LQM_017
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- GUGAAAC*GUGGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQM_017 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0673
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6LQM|1|2|G|415
6LQM|1|2|U|416
6LQM|1|2|G|417
6LQM|1|2|A|418
6LQM|1|2|A|419
6LQM|1|2|A|420
6LQM|1|2|C|421
*
6LQM|1|8|G|13
6LQM|1|8|U|14
6LQM|1|8|G|15
6LQM|1|8|G|16
6LQM|1|8|A|17
6LQM|1|8|U|18
6LQM|1|8|C|19
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 0
- Zinc finger protein 622
- Chain D
- 60S ribosomal protein L4
- Chain Y
- 60S ribosomal protein L17
- Chain t
- 60S ribosomal protein L32
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