IL_6LQM_024

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6LQM|1|2|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_024 not in the Motif Atlas

Geometric match to IL_5J7L_247

Geometric discrepancy: 0.3631

The information below is about IL_5J7L_247

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6LQM|1|2|G|487
6LQM|1|2|G|488
*
6LQM|1|2|C|665
6LQM|1|2|G|666
6LQM|1|2|A|667
6LQM|1|2|C|668
6LQM|1|2|C|669

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain l

60S ribosomal protein L28