IL_6LQM_039

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCUC*GCCCGG

Length

10 nucleotides

Bulged bases

6LQM|1|2|C|1214, 6LQM|1|2|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_039 not in the Motif Atlas

Geometric match to IL_4EYA_008

Geometric discrepancy: 0.3497

The information below is about IL_4EYA_008

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_65740.1

Basepair signature

cWW-L-R-L-R-cWW

Number of instances in this motif group

6

Unit IDs

6LQM|1|2|C|1081
6LQM|1|2|C|1082
6LQM|1|2|U|1083
6LQM|1|2|C|1084
*
6LQM|1|2|G|1213
6LQM|1|2|C|1214
6LQM|1|2|C|1215
6LQM|1|2|C|1216
6LQM|1|2|G|1217
6LQM|1|2|G|1218

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain w

60S ribosomal protein L7