IL_6LQM_043

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

G(P4U)G*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_043 not in the Motif Atlas

Homologous match to IL_8C3A_023

Geometric discrepancy: 0.2793

The information below is about IL_8C3A_023

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6LQM|1|2|G|1347
6LQM|1|2|P4U|1348
6LQM|1|2|G|1349
*
6LQM|1|2|C|1507
6LQM|1|2|A|1508
6LQM|1|2|C|1509

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain U

60S ribosomal protein L15

Chain Z

60S ribosomal protein L18