IL_6LQM_058
3D structure
- PDB id
- 6LQM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state C
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- UUU*A(PSU)A
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LQM_058 not in the Motif Atlas
- Homologous match to IL_8C3A_037
- Geometric discrepancy: 0.3187
- The information below is about IL_8C3A_037
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
6LQM|1|2|U|1671
6LQM|1|2|U|1672
6LQM|1|2|U|1673
*
6LQM|1|2|A|1682
6LQM|1|2|PSU|1683
6LQM|1|2|A|1684
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L29
- Chain L
- 60S ribosomal protein L27a
- Chain Q
- 60S ribosomal protein L13
- Chain Z
- 60S ribosomal protein L18
- Chain c
- 60S ribosomal protein L21
Coloring options: