IL_6LQM_060

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CUCGCAGACCCGACGCCCGCCACG*CG

Length

26 nucleotides

Bulged bases

6LQM|1|2|C|1704, 6LQM|1|2|C|1707, 6LQM|1|2|C|1714

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|C|1694
6LQM|1|2|U|1695
6LQM|1|2|C|1696
6LQM|1|2|G|1697
6LQM|1|2|C|1698
6LQM|1|2|A|1699
6LQM|1|2|G|1700
6LQM|1|2|A|1701
6LQM|1|2|C|1702
6LQM|1|2|C|1703
6LQM|1|2|C|1704
6LQM|1|2|G|1705
6LQM|1|2|A|1706
6LQM|1|2|C|1707
6LQM|1|2|G|1708
6LQM|1|2|C|1709
6LQM|1|2|C|1714
6LQM|1|2|C|1715
6LQM|1|2|G|1716
6LQM|1|2|C|1717
6LQM|1|2|C|1718
6LQM|1|2|A|1719
6LQM|1|2|C|1720
6LQM|1|2|G|1721
*
6LQM|1|2|C|1841
6LQM|1|2|G|1842

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain D

60S ribosomal protein L4

Chain Z

60S ribosomal protein L18

Chain c

60S ribosomal protein L21

Chain w

60S ribosomal protein L7