IL_6LQM_126

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CCA(1MA)G*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 1MA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_126 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.1157

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6LQM|1|2|C|4412
6LQM|1|2|C|4413
6LQM|1|2|A|4414
6LQM|1|2|1MA|4415
6LQM|1|2|G|4416
*
6LQM|1|2|C|4426
6LQM|1|2|G|4427
6LQM|1|2|A|4428
6LQM|1|2|C|4429
6LQM|1|2|G|4430

Current chains

Chain 2

28S rRNA

Nearby chains

Chain J

60S ribosomal protein L10-like

Chain R

Ubiquitin-60S ribosomal protein L40