IL_6LQM_171

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

CGGGG*CGCCGUG

Length

12 nucleotides

Bulged bases

6LQM|1|2|G|1359, 6LQM|1|2|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|C|1357
6LQM|1|2|G|1358
6LQM|1|2|G|1359
6LQM|1|2|G|1360
6LQM|1|2|G|1361
*
6LQM|1|2|C|1376
6LQM|1|2|G|1377
6LQM|1|2|C|1378
6LQM|1|2|C|1379
6LQM|1|2|G|1380
6LQM|1|2|U|1381
6LQM|1|2|G|1382

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15