IL_6LQM_181

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LQM_181 not in the Motif Atlas

Homologous match to IL_8P9A_316

Geometric discrepancy: 0.249

The information below is about IL_8P9A_316

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.1

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

4

Unit IDs

6LQM|1|2|PSU|3715
6LQM|1|2|C|3716
6LQM|1|2|A|3717
6LQM|1|2|A2M|3718
6LQM|1|2|A|3719
6LQM|1|2|G|3720
6LQM|1|2|U|3721
*
6LQM|1|2|A|3732
6LQM|1|2|A|3733
6LQM|1|2|U|3734
6LQM|1|2|G|3735
6LQM|1|2|A|3736
6LQM|1|2|A|3737
6LQM|1|2|G|3738

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 3

60S ribosomal export protein NMD3

Chain K

60S ribosomal protein L36

Chain m

60S ribosomal protein L8