IL_6LQM_183

3D structure

PDB id

6LQM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAA(B8W)*CGAC

Length

43 nucleotides

Bulged bases

6LQM|1|2|G|4104, 6LQM|1|2|A|4105, 6LQM|1|2|G|4115, 6LQM|1|2|C|4116, 6LQM|1|2|U|4117, 6LQM|1|2|U|4118, 6LQM|1|2|G|4121

QA status

Modified nucleotides: B8W

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LQM|1|2|G|4091
6LQM|1|2|G|4092
6LQM|1|2|G|4093
6LQM|1|2|G|4094
6LQM|1|2|G|4095
6LQM|1|2|C|4096
6LQM|1|2|G|4097
6LQM|1|2|A|4098
6LQM|1|2|G|4099
6LQM|1|2|C|4100
6LQM|1|2|C|4101
6LQM|1|2|C|4102
6LQM|1|2|C|4103
6LQM|1|2|G|4104
6LQM|1|2|A|4105
6LQM|1|2|G|4106
6LQM|1|2|G|4107
6LQM|1|2|G|4108
6LQM|1|2|G|4109
6LQM|1|2|C|4110
6LQM|1|2|U|4111
6LQM|1|2|C|4112
6LQM|1|2|U|4113
6LQM|1|2|C|4114
6LQM|1|2|G|4115
6LQM|1|2|C|4116
6LQM|1|2|U|4117
6LQM|1|2|U|4118
6LQM|1|2|C|4119
6LQM|1|2|U|4120
6LQM|1|2|G|4121
6LQM|1|2|G|4122
6LQM|1|2|C|4123
6LQM|1|2|G|4124
6LQM|1|2|C|4125
6LQM|1|2|C|4126
6LQM|1|2|A|4127
6LQM|1|2|A|4128
6LQM|1|2|B8W|4129
*
6LQM|1|2|C|4155
6LQM|1|2|G|4156
6LQM|1|2|A|4157
6LQM|1|2|C|4158

Current chains

Chain 2

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L30

Chain F

60S ribosomal protein L34

Chain G

60S ribosomal protein L7a

Chain X

60S ribosomal protein L37a

Chain i

60S ribosomal protein L27

Chain m

60S ribosomal protein L8