IL_6LSS_010

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CCGCUCGUGG*CGGCG

Length

15 nucleotides

Bulged bases

6LSS|1|2|C|183, 6LSS|1|2|C|185, 6LSS|1|2|G|186, 6LSS|1|2|U|187, 6LSS|1|2|G|188

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|C|180
6LSS|1|2|C|181
6LSS|1|2|G|182
6LSS|1|2|C|183
6LSS|1|2|U|184
6LSS|1|2|C|185
6LSS|1|2|G|186
6LSS|1|2|U|187
6LSS|1|2|G|188
6LSS|1|2|G|189
*
6LSS|1|2|C|252
6LSS|1|2|G|253
6LSS|1|2|G|254
6LSS|1|2|C|255
6LSS|1|2|G|256

Current chains

Chain 2

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L35

Chain M

60S ribosomal protein L37

Chain Q

60S ribosomal protein L13