IL_6LSS_016
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- GUGAAAC*G(OMU)GGAUC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LSS_016 not in the Motif Atlas
- Geometric match to IL_5J7L_245
- Geometric discrepancy: 0.0912
- The information below is about IL_5J7L_245
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_04021.2
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
6LSS|1|2|G|415
6LSS|1|2|U|416
6LSS|1|2|G|417
6LSS|1|2|A|418
6LSS|1|2|A|419
6LSS|1|2|A|420
6LSS|1|2|C|421
*
6LSS|1|8|G|13
6LSS|1|8|OMU|14
6LSS|1|8|G|15
6LSS|1|8|G|16
6LSS|1|8|A|17
6LSS|1|8|U|18
6LSS|1|8|C|19
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 28S rRNA
Nearby chains
- Chain 4
- Nucleolar GTP-binding protein 1
- Chain D
- 60S ribosomal protein L4
- Chain Y
- 60S ribosomal protein L17
- Chain k
- 60S ribosomal protein L32
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