IL_6LSS_021

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

6LSS|1|2|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|A|466
6LSS|1|2|U|467
6LSS|1|2|U|468
6LSS|1|2|C|469
6LSS|1|2|A|470
6LSS|1|2|A|471
6LSS|1|2|C|472
*
6LSS|1|2|G|682
6LSS|1|2|C|683
6LSS|1|2|G|684
6LSS|1|2|C|685
6LSS|1|2|A|686
6LSS|1|2|U|687
6LSS|1|2|U|688
6LSS|1|2|U|689

Current chains

Chain 2

28S rRNA

Nearby chains

Chain l

60S ribosomal protein L28

Chain o

60S ribosomal protein L6