IL_6LSS_022

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

6LSS|1|2|G|483, 6LSS|1|2|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_022 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2102

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

6LSS|1|2|G|482
6LSS|1|2|G|483
6LSS|1|2|U|484
6LSS|1|2|C|485
*
6LSS|1|2|G|671
6LSS|1|2|C|672

Current chains

Chain 2

28S rRNA

Nearby chains