IL_6LSS_023

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GG*CGACC

Length

7 nucleotides

Bulged bases

6LSS|1|2|A|667

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_023 not in the Motif Atlas

Geometric match to IL_8C3A_483

Geometric discrepancy: 0.3265

The information below is about IL_8C3A_483

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25360.1

Basepair signature

cWW-cWW

Number of instances in this motif group

10

Unit IDs

6LSS|1|2|G|487
6LSS|1|2|G|488
*
6LSS|1|2|C|665
6LSS|1|2|G|666
6LSS|1|2|A|667
6LSS|1|2|C|668
6LSS|1|2|C|669

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain l

60S ribosomal protein L28