IL_6LSS_031

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

AAGG*CAGCAGCACU

Length

14 nucleotides

Bulged bases

6LSS|1|2|A|932, 6LSS|1|2|C|934, 6LSS|1|2|A|935, 6LSS|1|2|C|936

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|A|732
6LSS|1|2|A|733
6LSS|1|2|G|734
6LSS|1|2|G|735
*
6LSS|1|2|C|928
6LSS|1|2|A|929
6LSS|1|2|G|930
6LSS|1|2|C|931
6LSS|1|2|A|932
6LSS|1|2|G|933
6LSS|1|2|C|934
6LSS|1|2|A|935
6LSS|1|2|C|936
6LSS|1|2|U|937

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain S

60S ribosomal protein L14

Chain b

60S ribosomal protein L18a