IL_6LSS_038

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CUC*GCCCG

Length

8 nucleotides

Bulged bases

6LSS|1|2|C|1214, 6LSS|1|2|C|1215

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_038 not in the Motif Atlas

Geometric match to IL_2ZKO_001

Geometric discrepancy: 0.3451

The information below is about IL_2ZKO_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

6LSS|1|2|C|1082
6LSS|1|2|U|1083
6LSS|1|2|C|1084
*
6LSS|1|2|G|1213
6LSS|1|2|C|1214
6LSS|1|2|C|1215
6LSS|1|2|C|1216
6LSS|1|2|G|1217

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain p

60S ribosomal protein L7