IL_6LSS_047
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- CGAG*CGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LSS_047 not in the Motif Atlas
- Geometric match to IL_3D0U_002
- Geometric discrepancy: 0.1516
- The information below is about IL_3D0U_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
6LSS|1|2|C|1431
6LSS|1|2|G|1432
6LSS|1|2|A|1433
6LSS|1|2|G|1434
*
6LSS|1|2|C|1450
6LSS|1|2|G|1451
6LSS|1|2|A|1452
6LSS|1|2|G|1453
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain Z
- 60S ribosomal protein L18
Coloring options: