IL_6LSS_051

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CC(OMG)A(A2M)AG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

6LSS|1|2|A|1650, 6LSS|1|2|G|1654

QA status

Modified nucleotides: OMG, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|C|1520
6LSS|1|2|C|1521
6LSS|1|2|OMG|1522
6LSS|1|2|A|1523
6LSS|1|2|A2M|1524
6LSS|1|2|A|1525
6LSS|1|2|G|1526
*
6LSS|1|2|C|1648
6LSS|1|2|U|1649
6LSS|1|2|A|1650
6LSS|1|2|G|1651
6LSS|1|2|U|1652
6LSS|1|2|A|1653
6LSS|1|2|G|1654
6LSS|1|2|C|1655
6LSS|1|2|U|1656
6LSS|1|2|G|1657

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain L

60S ribosomal protein L27a

Chain M

60S ribosomal protein L37

Chain Q

60S ribosomal protein L13

Chain U

60S ribosomal protein L15