IL_6LSS_060
3D structure
- PDB id
- 6LSS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a pre-60S ribosomal subunit - state preA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.23 Å
Loop
- Sequence
- CUCGCAGACCCGACGCCCGCCACG*CG
- Length
- 26 nucleotides
- Bulged bases
- 6LSS|1|2|C|1704, 6LSS|1|2|C|1707, 6LSS|1|2|G|1708, 6LSS|1|2|C|1714
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6LSS_060 not in the Motif Atlas
- Homologous match to IL_8P9A_264
- Geometric discrepancy: 0.5355
- The information below is about IL_8P9A_264
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_25463.2
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
6LSS|1|2|C|1694
6LSS|1|2|U|1695
6LSS|1|2|C|1696
6LSS|1|2|G|1697
6LSS|1|2|C|1698
6LSS|1|2|A|1699
6LSS|1|2|G|1700
6LSS|1|2|A|1701
6LSS|1|2|C|1702
6LSS|1|2|C|1703
6LSS|1|2|C|1704
6LSS|1|2|G|1705
6LSS|1|2|A|1706
6LSS|1|2|C|1707
6LSS|1|2|G|1708
6LSS|1|2|C|1709
6LSS|1|2|C|1714
6LSS|1|2|C|1715
6LSS|1|2|G|1716
6LSS|1|2|C|1717
6LSS|1|2|C|1718
6LSS|1|2|A|1719
6LSS|1|2|C|1720
6LSS|1|2|G|1721
*
6LSS|1|2|C|1841
6LSS|1|2|G|1842
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L29
- Chain D
- 60S ribosomal protein L4
- Chain Z
- 60S ribosomal protein L18
- Chain c
- 60S ribosomal protein L21
- Chain p
- 60S ribosomal protein L7
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