IL_6LSS_086

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

6LSS|1|2|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_086 not in the Motif Atlas

Geometric match to IL_6JQ5_003

Geometric discrepancy: 0.2439

The information below is about IL_6JQ5_003

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

6LSS|1|2|G|2549
6LSS|1|2|G|2550
*
6LSS|1|2|C|2768
6LSS|1|2|U|2769
6LSS|1|2|C|2770

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain O

60S ribosomal protein L38