IL_6LSS_087

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CGAUC*GG(B9B)AG

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: B9B

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_087 not in the Motif Atlas

Homologous match to IL_8P9A_295

Geometric discrepancy: 0.1949

The information below is about IL_8P9A_295

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

24

Unit IDs

6LSS|1|2|C|2589
6LSS|1|2|G|2590
6LSS|1|2|A|2591
6LSS|1|2|U|2592
6LSS|1|2|C|2593
*
6LSS|1|2|G|2752
6LSS|1|2|G|2753
6LSS|1|2|B9B|2754
6LSS|1|2|A|2755
6LSS|1|2|G|2756

Current chains

Chain 2

28S rRNA

Nearby chains

Chain F

60S ribosomal protein L34

Chain i

60S ribosomal protein L27

Chain m

60S ribosomal protein L8