IL_6LSS_117

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GGGGGCGAGCCCCGAGGGGCUCUCGCUUCUGGCGCCAA(B8W)C*GCGAC

Length

45 nucleotides

Bulged bases

6LSS|1|2|C|4102, 6LSS|1|2|G|4104, 6LSS|1|2|G|4115, 6LSS|1|2|C|4116, 6LSS|1|2|U|4117, 6LSS|1|2|U|4118, 6LSS|1|2|G|4121

QA status

Modified nucleotides: B8W

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6LSS|1|2|G|4091
6LSS|1|2|G|4092
6LSS|1|2|G|4093
6LSS|1|2|G|4094
6LSS|1|2|G|4095
6LSS|1|2|C|4096
6LSS|1|2|G|4097
6LSS|1|2|A|4098
6LSS|1|2|G|4099
6LSS|1|2|C|4100
6LSS|1|2|C|4101
6LSS|1|2|C|4102
6LSS|1|2|C|4103
6LSS|1|2|G|4104
6LSS|1|2|A|4105
6LSS|1|2|G|4106
6LSS|1|2|G|4107
6LSS|1|2|G|4108
6LSS|1|2|G|4109
6LSS|1|2|C|4110
6LSS|1|2|U|4111
6LSS|1|2|C|4112
6LSS|1|2|U|4113
6LSS|1|2|C|4114
6LSS|1|2|G|4115
6LSS|1|2|C|4116
6LSS|1|2|U|4117
6LSS|1|2|U|4118
6LSS|1|2|C|4119
6LSS|1|2|U|4120
6LSS|1|2|G|4121
6LSS|1|2|G|4122
6LSS|1|2|C|4123
6LSS|1|2|G|4124
6LSS|1|2|C|4125
6LSS|1|2|C|4126
6LSS|1|2|A|4127
6LSS|1|2|A|4128
6LSS|1|2|B8W|4129
6LSS|1|2|C|4130
*
6LSS|1|2|G|4154
6LSS|1|2|C|4155
6LSS|1|2|G|4156
6LSS|1|2|A|4157
6LSS|1|2|C|4158

Current chains

Chain 2

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L30

Chain F

60S ribosomal protein L34

Chain G

60S ribosomal protein L7a

Chain X

60S ribosomal protein L37a

Chain g

60S ribosomal protein L23a

Chain i

60S ribosomal protein L27

Chain m

60S ribosomal protein L8