IL_6LSS_120

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

GA(PSU)C*GAC

Length

7 nucleotides

Bulged bases

6LSS|1|2|A|4292

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_120 not in the Motif Atlas

Geometric match to IL_2O3X_003

Geometric discrepancy: 0.1668

The information below is about IL_2O3X_003

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6LSS|1|2|G|4291
6LSS|1|2|A|4292
6LSS|1|2|PSU|4293
6LSS|1|2|C|4294
*
6LSS|1|2|G|4316
6LSS|1|2|A|4317
6LSS|1|2|C|4318

Current chains

Chain 2

28S rRNA

Nearby chains

Chain C

60S ribosomal protein L29

Chain W

60S ribosomal protein L36a

Chain c

60S ribosomal protein L21