IL_6LSS_123

3D structure

PDB id

6LSS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of a pre-60S ribosomal subunit - state preA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.23 Å

Loop

Sequence

CCA(1MA)G*CGACG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6LSS_123 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.3617

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6LSS|1|2|C|4412
6LSS|1|2|C|4413
6LSS|1|2|A|4414
6LSS|1|2|1MA|4415
6LSS|1|2|G|4416
*
6LSS|1|2|C|4426
6LSS|1|2|G|4427
6LSS|1|2|A|4428
6LSS|1|2|C|4429
6LSS|1|2|G|4430

Current chains

Chain 2

28S rRNA

Nearby chains